Chef’s Table at Brooklyn Fare, a highly acclaimed restaurant with three Michelin stars, has closed amid a legal dispute between its chef and owner, leaving a culinary void for customers of fine dining in New York City, where the restaurant had been a top-dollar fixture of flavorful creativity for more than a decade.

The restaurant, which served an extensive tasting menu inspired by Japanese seafood and French cooking techniques, closed in July after its chef, César Ramirez, was fired by the owner, Moneer Issa, according to court records.

In July, Mr. Ramirez filed a lawsuit in State Supreme Court in Brooklyn against Mr. Issa and the restaurant’s holding company, Manhattan Fare Corp, claiming that he had been “arbitrarily terminated” and was owed tens of millions of dollars for defamation, unpaid wages and other damages.

In an affidavit filed in August, Mr. Issa said that he had fired Mr. Ramirez because he had stolen company property that was worth more than $100,000, including dishware, oven parts and wine cases.